The Ionian Sea plays a crucial role as a crossroads for various Mediterranean water masses, making it a significant factor in the seawater budgets, biogeochemistry, and biodiversity of the subbasins of the Mediterranean Sea. In recent years, numerous theories have been proposed in an effort to better understand the complex hydrography and dynamics of the Ionian. These theories primarily focus on the variability of the basin’s near-surface circulation, which is characterized by a recurring reversal that occurs over a period of 10–13 years. This variability is often attributed to internal processes and/or boundary forcing, as waters of Atlantic origin enter the basin from its western boundary. In this study, we utilize temperature–salinity profiles and absolute dynamic topography data provided by the Copernicus database to examine long-term changes in the vertical structure of the basin and their relationships with changes in the horizontal near-surface circulation. Our findings show that the vertical dependency of the density field of the basin undergoes significant fluctuations over interannual and decadal time scales, which induce important buoyancy changes throughout the water column and determine changes in the structure of the first baroclinic mode. However, no changes in the basin-averaged hydrographic structure can be related to the near-surface current reversals. These reversals are mainly associated with deformations of the main isopycnal surface, intended as the region of maximum buoyancy over the water column, suggesting that they do not impact the hydrographic properties of the various Ionian water masses. Instead, they alter their routes and relative volumes within different parts of the basin. © 2025 by the authors.

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